publications

2022

1. PLOS Comp Bio

   SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more

   Balci, Hasan, Dogrusoz, Ugur, Özgül, Yusuf Ziya, and Atayev, Perman

   PLOS Computational Biology , 2022

2021

1. IEEE TVCG

   fCoSE: a fast compound graph layout algorithm with constraint support

   Balci, Hasan, and Dogrusoz, Ugur

   IEEE Transactions on Visualization and Computer Graphics , 2021

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2. Inf Vis

   CoSEP: A compound spring embedder layout algorithm with support for ports

   Okka, Alihan, Dogrusoz, Ugur, and Balci, Hasan

   Information Visualization , 2021

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3. Bioinformatics

   Newt: a comprehensive web-based tool for viewing, constructing, and analyzing biological maps

   Balci, Hasan, Siper, Metin Can, Saleh, Nasim, Safarli, Ilkin, Roy, Ludovic, Kilicarslan, Merve, Ozaydin, Rumeysa, Mazein, Alexander, Auffray, Charles, Babur, Özgün, Demir, Emek, and Dogrusoz, Ugur

   Bioinformatics (Oxford, England) , 2021

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2018

1. PLOS ONE

   Efficient methods and readily customizable libraries for managing complexity of large networks

   Dogrusoz, Ugur, Karacelik, Alper, Safarli, Ilkin, Balci, Hasan, Dervishi, Leonard, and Siper, Metin Can

   PLOS ONE , 2018

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2017

1. SIVP

   Sun position estimation and tracking for virtual object placement in time-lapse videos

   Balcı, Hasan, and Güdükbay, Uğur

   Signal, Image and Video Processing , 2017

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